Inputs

The tool takes as input path to directories containing embedding file (where it looks for files named image_emd.tsv or ppi_emd.tsv) or paths to specific embedding files. It requires two or more embedding files in TSV format. If directories are ro-crates it uses the json files to retrieve the metadata.

• embeddings files

  A tab-separated file containing the embeddings. Each row corresponds to gene name and the subsequent columns contain the embedding vector.

        1   2       3       4
BPTF        -0.037030112    -0.139459819    0.417184144     0.386600941
KAT2B       0.02969132      -0.139459819    -0.038685802    0.136547908
PARP1       -0.037030112    -0.139459819    0.540370524     0.119614214
MSL1        0.18169874      -0.139459819    -0.038685802    0.152157351
KAT6B       -0.037030112    -0.139459819    0.308141887     0.257056117